Канал: Single Cell Genomics, Transcriptomics & Proteomics

Spatial Data Analysis Using QuPath: How to Perform Cell Segmentation Using StarDist in QuPath

Spatial Data Analysis Using QuPath: How to Perform Cell Segmentation Using StarDist in QuPath

Cell-cell Communication Analysis：How to use the Liana package

Cell-cell Communication Analysis：How to use the Liana package

Running Cell Ranger count

Running Cell Ranger count

Download and Install Cell Ranger

Download and Install Cell Ranger

How to download raw scRNA-seq data from NCBI using sratoolkit

How to download raw scRNA-seq data from NCBI using sratoolkit

Nanostring CosMx 19K Gene Panel: Human Pancreas Spatial Dataset

Nanostring CosMx 19K Gene Panel: Human Pancreas Spatial Dataset

Nanostring CosMx Mouse Neuroscience RNA Panel

Nanostring CosMx Mouse Neuroscience RNA Panel

Converting Seurat Object into Scanpy Object in R Markdown

Converting Seurat Object into Scanpy Object in R Markdown

Converting Scanpy Object into Seurat Object in R Markdown

Converting Scanpy Object into Seurat Object in R Markdown

Analzye Visium High Definition Spatial Dataset with Seurat

Analzye Visium High Definition Spatial Dataset with Seurat

Recreate Seurat Cell Clusters from Xenium Onboard Analysis

Recreate Seurat Cell Clusters from Xenium Onboard Analysis

Microbiome Data Analysis Video 3: Create a phyloseq object

Microbiome Data Analysis Video 3: Create a phyloseq object

Microbiome Data Analysis in R--Video 2: Prepare otu_table from raw fastq files

Microbiome Data Analysis in R--Video 2: Prepare otu_table from raw fastq files

Microbiome Data Analysis in R--Video 1: Prepare otu_table from raw fastq files

Microbiome Data Analysis in R--Video 1: Prepare otu_table from raw fastq files

Identify Doublets using Doubletdetection Package in Python

Identify Doublets using Doubletdetection Package in Python

Identify Doublets using Scrublet Package in Scanpy

Identify Doublets using Scrublet Package in Scanpy

Build Metacells with SuperCell & Analyse Metacells with Seurat

Build Metacells with SuperCell & Analyse Metacells with Seurat

Create Volcano Plot using the EnhancedVolcano Package

Create Volcano Plot using the EnhancedVolcano Package

SEACell Video Tutorial 2: Create Metacells from scRNA-seq Data

SEACell Video Tutorial 2: Create Metacells from scRNA-seq Data

SEACell Video Tutorial 1: Create Metacells from scRNA-seq Data

SEACell Video Tutorial 1: Create Metacells from scRNA-seq Data

CellRank Video Tutorial 7: Cluster Genes with Similar Expression Trends

CellRank Video Tutorial 7: Cluster Genes with Similar Expression Trends

CellRank Video Tutorial 6: Visualize Gene Expression Trends

CellRank Video Tutorial 6: Visualize Gene Expression Trends

CellRank Video Tutorial 5: Uncover Driver Genes

CellRank Video Tutorial 5: Uncover Driver Genes

CellRank Video Tutorial 4: Estimating Fate Probabilities

CellRank Video Tutorial 4: Estimating Fate Probabilities

CellRank Video Tutorial 3: Computing Initial and Terminal Cell States

CellRank Video Tutorial 3: Computing Initial and Terminal Cell States

CellRank Video Tutorial 2: Computing Pseudotime Transition Matrix

CellRank Video Tutorial 2: Computing Pseudotime Transition Matrix

CellRank Video Tutorial 1: RNA Velocity Transition Matrix

CellRank Video Tutorial 1: RNA Velocity Transition Matrix

Cell Differentiation Trajectory Analysis and Cell State Analysis using Palantir

Cell Differentiation Trajectory Analysis and Cell State Analysis using Palantir

scRNA-seq Data Analysis in Seurat V5: Analysing SCTransform-normalized Datasets

scRNA-seq Data Analysis in Seurat V5: Analysing SCTransform-normalized Datasets

scRNA-seq Data Analysis in Seurat V5: Analysing More Than One Dataset

scRNA-seq Data Analysis in Seurat V5: Analysing More Than One Dataset

scRNA-seq Data Analysis in Seurat V5: Analysing Just One Sequencing Dataset

scRNA-seq Data Analysis in Seurat V5: Analysing Just One Sequencing Dataset

Maxfuse Video Tutorial 4: CODEX and scRNA-seq Joint Embedding

Maxfuse Video Tutorial 4: CODEX and scRNA-seq Joint Embedding

Maxfuse Video Tutorial 3: CODEX and scRNA-seq Data Integration

Maxfuse Video Tutorial 3: CODEX and scRNA-seq Data Integration

Maxfuse Video Tutorial 2: CODEX and scRNA-seq Data Preprocessing

Maxfuse Video Tutorial 2: CODEX and scRNA-seq Data Preprocessing

Maxfuse Video Tutorial 1: Introduction

Maxfuse Video Tutorial 1: Introduction

Spatial Data Analysis using Squidpy: Vizgen MERFISH Mouse Brain Receptor Map

Spatial Data Analysis using Squidpy: Vizgen MERFISH Mouse Brain Receptor Map

Spatial Data Analysis using Seurat: Vizgen MERFISH Mouse Brain Receptor Map

Spatial Data Analysis using Seurat: Vizgen MERFISH Mouse Brain Receptor Map

Identify Doublets using scDblFinder in scRNA-seq dataset

Identify Doublets using scDblFinder in scRNA-seq dataset

scTCR-seq Data Analysis using Scirpy Part: VI, Query Epitope Database

scTCR-seq Data Analysis using Scirpy Part: VI, Query Epitope Database

scTCR-seq Data Analysis using Scirpy: Part V, Gene Usage

scTCR-seq Data Analysis using Scirpy: Part V, Gene Usage

scTCR-seq Data Analysis using Scirpy: Part IV, Clonotype Analysis

scTCR-seq Data Analysis using Scirpy: Part IV, Clonotype Analysis

scTCR-seq Data Analysis using Scirpy: Part III, Define Clonotype and Clonotype Clusters

scTCR-seq Data Analysis using Scirpy: Part III, Define Clonotype and Clonotype Clusters

scTCR-seq Data Analysis using Scirpy: Part II, Process the Demonstration Data

scTCR-seq Data Analysis using Scirpy: Part II, Process the Demonstration Data

scTCR-seq Data Analysis using Scirpy: Part I, Importing Receptor Data

scTCR-seq Data Analysis using Scirpy: Part I, Importing Receptor Data

Spatial Data Analysis using Squidpy: Vizgen MERFISH Mouse Liver Map

Spatial Data Analysis using Squidpy: Vizgen MERFISH Mouse Liver Map

Spatial Data Analysis Using QuPath: Cell Segmentation Using QuPath Standard Cell Detection method

Spatial Data Analysis Using QuPath: Cell Segmentation Using QuPath Standard Cell Detection method

Spatial Data Analysis using Seurat: 10X Genomics Xenium Human Breast Cancer Dataset

Spatial Data Analysis using Seurat: 10X Genomics Xenium Human Breast Cancer Dataset

Spatial Data Analysis using Squidpy: 10X Genomics Xenium Human Breast Cancer Dataset

Spatial Data Analysis using Squidpy: 10X Genomics Xenium Human Breast Cancer Dataset

Spatial Data Analysis using Giotto: Nanostring CosMx Lung Cancer Dataset

Spatial Data Analysis using Giotto: Nanostring CosMx Lung Cancer Dataset

Spatial Data Analysis using Squidpy: Nanostring CosMx Lung Cancer Dataset

Spatial Data Analysis using Squidpy: Nanostring CosMx Lung Cancer Dataset

Gene_ID and Protein_ID Annotation using biomaRt

Gene_ID and Protein_ID Annotation using biomaRt

Spatial Data Analysis Using Giotto: 3D MERfish Dataset Analysis Part II

Spatial Data Analysis Using Giotto: 3D MERfish Dataset Analysis Part II

Spatial Data Analysis Using Giotto: 3D MERfish Dataset Analysis Part I

Spatial Data Analysis Using Giotto: 3D MERfish Dataset Analysis Part I

scRNA-seq Data Analysis Using Giotto, Part IV: scRNA-seq Data Integration

scRNA-seq Data Analysis Using Giotto, Part IV: scRNA-seq Data Integration

scRNA-seq Data Analysis Using Giotto, Part III: Subset and Re-cluster

scRNA-seq Data Analysis Using Giotto, Part III: Subset and Re-cluster

scRNA-seq Data Analysis Using Giotto, Part II: Differential Expression and Cell Type Annotation

scRNA-seq Data Analysis Using Giotto, Part II: Differential Expression and Cell Type Annotation

scRNA-seq Data Analysis Using Giotto, Part I: Standard Workflow

scRNA-seq Data Analysis Using Giotto, Part I: Standard Workflow

Spatial Data Analysis Using Giotto: 3D STARmap Mouse Cortex Dataset

Spatial Data Analysis Using Giotto: 3D STARmap Mouse Cortex Dataset

Spatial Data Analysis Using Giotto: CODEX (Akoya PhenoCycler) Mouse Spleen Dataset

Spatial Data Analysis Using Giotto: CODEX (Akoya PhenoCycler) Mouse Spleen Dataset

Spatial Data Analysis using Seurat: CODEX (Akoya PhenoCycler) Human Lymph Node Dataset

Spatial Data Analysis using Seurat: CODEX (Akoya PhenoCycler) Human Lymph Node Dataset

DESeq2 Video Tutorial 2: scRNA-seq Data Analysis

DESeq2 Video Tutorial 2: scRNA-seq Data Analysis

DESeq2 Video Tutorial 1: Bulk RNA-seq Data Analysis

DESeq2 Video Tutorial 1: Bulk RNA-seq Data Analysis

Bisulfite Sequencing Data Analysis: Differential Methylation in Gene Promoters

Bisulfite Sequencing Data Analysis: Differential Methylation in Gene Promoters

Bisulfite Sequencing Data Analysis: Differential Methylation Analysis at CpG Loci

Bisulfite Sequencing Data Analysis: Differential Methylation Analysis at CpG Loci

Alternative RNA Splicing Analysis: edgeR Video Tutorial 2

Alternative RNA Splicing Analysis: edgeR Video Tutorial 2

Standard edgeR Workflow: edgeR Video Tutorial 1

Standard edgeR Workflow: edgeR Video Tutorial 1

Pesudo-bulk RNA TutorialsVideo 3: Complex edgeR Pipeline

Pesudo-bulk RNA TutorialsVideo 3: Complex edgeR Pipeline

Spatial Data Analysis using Seurat: Xenium Mouse Pup Dataset

Spatial Data Analysis using Seurat: Xenium Mouse Pup Dataset

Pesudo-bulk RNA Video Tutorial 2: pairwise Comparisons using Classic edgeR Pipeline

Pesudo-bulk RNA Video Tutorial 2: pairwise Comparisons using Classic edgeR Pipeline

Pesudo-bulk RNA Video Tutorial 1: Data Preparation

Pesudo-bulk RNA Video Tutorial 1: Data Preparation

Rsubread Video Tutorial 3: scRNA-seq Data Read Mapping

Rsubread Video Tutorial 3: scRNA-seq Data Read Mapping

Rsubread Video Tutorial 2: Multi-Sample Read Mapping

Rsubread Video Tutorial 2: Multi-Sample Read Mapping

Rsubread Video Tutorial 1: Building Index and Read Mapping

Rsubread Video Tutorial 1: Building Index and Read Mapping

Spatial Data Analysis using Seurat: Nanostring CosMx Lung Cancer Dataset

Spatial Data Analysis using Seurat: Nanostring CosMx Lung Cancer Dataset

scTCR-seq Video Tutorial 5: Clonotype Visualization by Cell Clusters

scTCR-seq Video Tutorial 5: Clonotype Visualization by Cell Clusters

scTCR-seq Video Tutorial 4 : Interacting with Single Cell Objects

scTCR-seq Video Tutorial 4 : Interacting with Single Cell Objects

scTCR-seq Video Tutorial 3: Advanced Visualization of Clonotypes

scTCR-seq Video Tutorial 3: Advanced Visualization of Clonotypes

scTCR_seq Video Tutorial 2: Basic Visualization of Clonotypes

scTCR_seq Video Tutorial 2: Basic Visualization of Clonotypes

scTCR_seq Video Tutorial 1: Introduction and Data Loading

scTCR_seq Video Tutorial 1: Introduction and Data Loading

Corrplot Video Tutorial 3: Visualize P-values & Confidence Intervals

Corrplot Video Tutorial 3: Visualize P-values & Confidence Intervals

Corrplot Video Tutorial 2: Color and Text Legends

Corrplot Video Tutorial 2: Color and Text Legends

Corrplot Video Tutorial 1: Method, Order, Type & Diag

Corrplot Video Tutorial 1: Method, Order, Type & Diag

Single Cell Data Integration: Cross Species Data Integration

Single Cell Data Integration: Cross Species Data Integration

SCENIC Video Tutorial 4: Exploring and Interpreting the Results

SCENIC Video Tutorial 4: Exploring and Interpreting the Results

SCENIC Video Tutorial 3: Binarize the Network Activity and Clustering Cells on The Regulon Activity

SCENIC Video Tutorial 3: Binarize the Network Activity and Clustering Cells on The Regulon Activity

SCENIC Video Tutorial 2: Running SCENIC

SCENIC Video Tutorial 2: Running SCENIC

SCENIC Video Tutorial 1: Introduction and Setup

SCENIC Video Tutorial 1: Introduction and Setup

ComplexHeatmap Video Tutorial 7: Heatmap Annotations--Part I

ComplexHeatmap Video Tutorial 7: Heatmap Annotations--Part I

ComplexHeatmap Video Tutorial 6: Three Dimensional (3D) Heatmap

ComplexHeatmap Video Tutorial 6: Three Dimensional (3D) Heatmap

ComplexHeatmap Video Tutorial 5: Cell-function, Set Row and Column Orders

ComplexHeatmap Video Tutorial 5: Cell-function, Set Row and Column Orders

ComplexHeatmap Video Tutorial 4: Single Heatmap--Splitting

ComplexHeatmap Video Tutorial 4: Single Heatmap--Splitting

ComplexHeatmap Video Tutorial 3: Single Heatmap -- Size and Labels

ComplexHeatmap Video Tutorial 3: Single Heatmap -- Size and Labels

ComplexHeatmap Video Tutorial 2: Single Heatmap--Colors

ComplexHeatmap Video Tutorial 2: Single Heatmap--Colors

ComplexHeatmap Video Tutorial 1: Single Heatmap--Titles

ComplexHeatmap Video Tutorial 1: Single Heatmap--Titles

Single Cell Proteomics Video Tutorial 4: Process Protein Data and Cluster Cells

Single Cell Proteomics Video Tutorial 4: Process Protein Data and Cluster Cells

Single Cell Proteomics Video Tutorial 3: Process and Aggregate Peptide Data to Protein Data

Single Cell Proteomics Video Tutorial 3: Process and Aggregate Peptide Data to Protein Data

Single Cell Proteomics Video Tutorial 2: Process PSM Data and Aggregate PSM Data to Peptide Data

Single Cell Proteomics Video Tutorial 2: Process PSM Data and Aggregate PSM Data to Peptide Data

Single Cell Proteomics Video Tutorial 1: Loading Libraries and Loading Single Cell Proteomics Data

Single Cell Proteomics Video Tutorial 1: Loading Libraries and Loading Single Cell Proteomics Data

NicheNet Video Tutorial 3: Inferring Ligand-to-target Signaling Paths

NicheNet Video Tutorial 3: Inferring Ligand-to-target Signaling Paths

NicheNet Video Tutorial 2: Perform NicheNet Analysis Starting from A Seurat Object

NicheNet Video Tutorial 2: Perform NicheNet Analysis Starting from A Seurat Object

NicheNet Video Tutorial 1: Introduction to NicheNet

NicheNet Video Tutorial 1: Introduction to NicheNet

Cellchat Video Tutorial 9: Analysis of Communication Networks for Sequencing Based Spatial Dataset

Cellchat Video Tutorial 9: Analysis of Communication Networks for Sequencing Based Spatial Dataset

Cellchat Video Tutorial 8: Compare Communication Networks across Biological Conditions--Part III

Cellchat Video Tutorial 8: Compare Communication Networks across Biological Conditions--Part III

Cellchat Video Tutorial 7: Compare Communication Networks across Biological Conditions--Part II

Cellchat Video Tutorial 7: Compare Communication Networks across Biological Conditions--Part II

Fans requested Video 2: Converting Gene IDs into Gene Symbols in your analysed Seurat Object

Fans requested Video 2: Converting Gene IDs into Gene Symbols in your analysed Seurat Object

Fans requested Video 1: Analysing Dataset GSE4037985 (A TSV Dataset)

Fans requested Video 1: Analysing Dataset GSE4037985 (A TSV Dataset)

Cellchat Video Tutorial 6: Compare Communication Networks across Biological Conditions--Part I

Cellchat Video Tutorial 6: Compare Communication Networks across Biological Conditions--Part I

Cellchat Video Tutorial 5: Systematic Analysis of Cell-cell Communication Networks

Cellchat Video Tutorial 5: Systematic Analysis of Cell-cell Communication Networks

Cellchat Video Tutorial 4: Visualization of Cell-Cell Communication Network

Cellchat Video Tutorial 4: Visualization of Cell-Cell Communication Network

Cellchat Video Tutorial 3: Inference of Cell-cell Communication Network

Cellchat Video Tutorial 3: Inference of Cell-cell Communication Network

Cellchat Video Tutorial 2: Set and Update CellChat Databases

Cellchat Video Tutorial 2: Set and Update CellChat Databases

Cellchat Video Tutorial 1: Creating a CellChat object

Cellchat Video Tutorial 1: Creating a CellChat object

Seurat V5 Video Tutorial 4 : Data Integration in Seurat v5

Seurat V5 Video Tutorial 4 : Data Integration in Seurat v5

Seurat V5 Video Tutorial 3: Reference Mapping 1.5M Immune Cells

Seurat V5 Video Tutorial 3: Reference Mapping 1.5M Immune Cells

scRNA-seq Video Tutorial 21: Azimuth Annotation in R

scRNA-seq Video Tutorial 21: Azimuth Annotation in R

Seurat V5 Video Tutorial 2: Sketch-based Large Data Analysis

Seurat V5 Video Tutorial 2: Sketch-based Large Data Analysis

Seurat V5 Video Tutorial 1: Using BPCells with Seurat V5 Object

Seurat V5 Video Tutorial 1: Using BPCells with Seurat V5 Object

Multimodal Analysis in Python: Single cell CITE-seq Data Analysis Using Muon

Multimodal Analysis in Python: Single cell CITE-seq Data Analysis Using Muon

Scanpy Video Tutorial 8: Identify Differentially Expressed Genes Across Conditions

Scanpy Video Tutorial 8: Identify Differentially Expressed Genes Across Conditions

Seurat Video Tutorial 20: Identify Conserved and Differentially Expressed Genes Across Conditions

Seurat Video Tutorial 20: Identify Conserved and Differentially Expressed Genes Across Conditions

Scanpy Video Tutorial 7: Integrating Spatial Sequencing Datasets Using Scanorama

Scanpy Video Tutorial 7: Integrating Spatial Sequencing Datasets Using Scanorama

Scanpy Video Tutorial 6: Analysis and Visualization of Spatial Transcriptomics Data

Scanpy Video Tutorial 6: Analysis and Visualization of Spatial Transcriptomics Data

Scanpy Video Tutorial 5: Finding and Visualizing Marker Genes

Scanpy Video Tutorial 5: Finding and Visualizing Marker Genes

Scanpy Video Tutorial 4: Scanpy Core Plotting Functions

Scanpy Video Tutorial 4: Scanpy Core Plotting Functions

Single Cell Data Integration: Mapping and Annotating Query Datasets

Single Cell Data Integration: Mapping and Annotating Query Datasets

Single Cell Data Integration: Mapping Datasets Using Ingest in Scanpy

Single Cell Data Integration: Mapping Datasets Using Ingest in Scanpy

Single Cell Data Integration: Integrating Datasets Using BBKNN in Scanpy and Python

Single Cell Data Integration: Integrating Datasets Using BBKNN in Scanpy and Python

Single Cell Data Integration: Integrating Datasets Using FastMNN and Liger Packages

Single Cell Data Integration: Integrating Datasets Using FastMNN and Liger Packages

Single Cell Data Integration: Integrating Datasets Using Harmony

Single Cell Data Integration: Integrating Datasets Using Harmony

Monocle3 Video Tutorials 4: Constructing Trajectories for scATAC-seq data

Monocle3 Video Tutorials 4: Constructing Trajectories for scATAC-seq data

Monocle 3 video 3: Converting Seurat Object to CDS Object for Trajectory Analysis

Monocle 3 video 3: Converting Seurat Object to CDS Object for Trajectory Analysis

Monocle3 Video Tutorial 2: Constructing Trajectories using Monocle3 analysed scRNA-seq data

Monocle3 Video Tutorial 2: Constructing Trajectories using Monocle3 analysed scRNA-seq data

Monocle3 Video Tutorial 1: scRNA-seq Data Loading, Pre-processing and Cell Clustering

Monocle3 Video Tutorial 1: scRNA-seq Data Loading, Pre-processing and Cell Clustering

Multimodal Analysis in Seurat: Demultiplexing with hashtag oligonucleotide (HTO)

Multimodal Analysis in Seurat: Demultiplexing with hashtag oligonucleotide (HTO)

Multimodal Analysis in Seurat : Joint RNA-seq and Antibody TAG Data Analysis Using WNN

Multimodal Analysis in Seurat : Joint RNA-seq and Antibody TAG Data Analysis Using WNN

Multimodal Analysis in Seurat: Joint RNA and ATAC Data Analysis Using WNN

Multimodal Analysis in Seurat: Joint RNA and ATAC Data Analysis Using WNN

Weighted Gene Co-expression Network Analysis (WGCNA)Part III: Relate Modules and Genes to Trait Data

Weighted Gene Co-expression Network Analysis (WGCNA)Part III: Relate Modules and Genes to Trait Data

Weighted Gene Co-expression Network Analysis (WGCNA)—Part II: Network and Module Identification

Weighted Gene Co-expression Network Analysis (WGCNA)—Part II: Network and Module Identification

Weighted Gene Co-expression Network Analysis (WGCNA)--Part I: Data Input and Cleaning

Weighted Gene Co-expression Network Analysis (WGCNA)--Part I: Data Input and Cleaning

scATAC-seq Video Tutorials--Video 8: Single Cell Mitochondrial DNA Genotyping

scATAC-seq Video Tutorials--Video 8: Single Cell Mitochondrial DNA Genotyping

scATAC-seq Video Tutorials--Video 7: Merging Datasets by Creating a Set of Common Peaks

scATAC-seq Video Tutorials--Video 7: Merging Datasets by Creating a Set of Common Peaks

scATAC-seq Video Tutorials--Video 6: DNA Sequence Motif Analysis

scATAC-seq Video Tutorials--Video 6: DNA Sequence Motif Analysis

scATAC-seq Video Tutorials--Video 5: Plotting Genomic Regions

scATAC-seq Video Tutorials--Video 5: Plotting Genomic Regions

scATAC-seq Video Tutorials--Video 4: Finding Differentially Accessible Peaks

scATAC-seq Video Tutorials--Video 4: Finding Differentially Accessible Peaks

scATAC-seq Video Tutorials--Video 3: Integrating and Co-embedding with scRNA-seq Data

scATAC-seq Video Tutorials--Video 3: Integrating and Co-embedding with scRNA-seq Data

scATAC-seq Video Tutorials--Video 2: Name Cell Clusters Using Predicted Gene Activities

scATAC-seq Video Tutorials--Video 2: Name Cell Clusters Using Predicted Gene Activities

scATAC-seq Video Tutorials--Video 1: Standard Workflow Analysis

scATAC-seq Video Tutorials--Video 1: Standard Workflow Analysis

Multimodal Analysis in Seurat: Joint RNA-seq and Antibody TAG CITE-seq Analysis

Multimodal Analysis in Seurat: Joint RNA-seq and Antibody TAG CITE-seq Analysis

scRNA-seq Data Analysis--Video 19: Understanding the Basics

scRNA-seq Data Analysis--Video 19: Understanding the Basics

scRNA-seq Data Analysis -- Video 16: Coding with ChatGPT

scRNA-seq Data Analysis -- Video 16: Coding with ChatGPT

Scanpy Video Tutorials--Video 3: Subset Cell Clusters

Scanpy Video Tutorials--Video 3: Subset Cell Clusters

Seurat Video Tutorials--Video 18: Seurat Plot Functions

Seurat Video Tutorials--Video 18: Seurat Plot Functions

Seurat Video Tutorials--Video 17: Integrate Datasets Between Control and Disease Samples

Seurat Video Tutorials--Video 17: Integrate Datasets Between Control and Disease Samples

Scanpy Video Tutorials--Video 2: Cell Clustering

Scanpy Video Tutorials--Video 2: Cell Clustering

Scanpy Video Tutorials--Video 1: Load the Data and Quality Control

Scanpy Video Tutorials--Video 1: Load the Data and Quality Control

Seurat Video Tutorials--Video 15: Using fgsea Package in R

Seurat Video Tutorials--Video 15: Using fgsea Package in R

Seurat Video Tutorials--Video 14: Calculating Cluster Frequencies

Seurat Video Tutorials--Video 14: Calculating Cluster Frequencies

Scanpy Seurat Video Tutorials: Convert H5AD Files into Seurat Objects

Scanpy Seurat Video Tutorials: Convert H5AD Files into Seurat Objects

Seurat Scanpy Video Tutorials: Convert Seurat Objects into H5AD Files

Seurat Scanpy Video Tutorials: Convert Seurat Objects into H5AD Files

Seurat Video Tutorials--Video 13: How to load TXT scRNA-seq data into R

Seurat Video Tutorials--Video 13: How to load TXT scRNA-seq data into R

Seurat Video Tutorials--Video 12: The Subset Function

Seurat Video Tutorials--Video 12: The Subset Function

Seurat Video Tutorials--Video 11: Rename Cell Clusters and Use Your Favourite Colours

Seurat Video Tutorials--Video 11: Rename Cell Clusters and Use Your Favourite Colours

Seurat Video Tutorials--Video 10: Find Markers and Differentially Expressed Genes

Seurat Video Tutorials--Video 10: Find Markers and Differentially Expressed Genes

Seurat Video Tutorials--Video 9: Spatial Sequencing Data Analysis

Seurat Video Tutorials--Video 9: Spatial Sequencing Data Analysis

Seurat Video Tutorials--Video 8: Loading Spatial Sequencing Data into R

Seurat Video Tutorials--Video 8: Loading Spatial Sequencing Data into R

Seurat Video Tutorials--video 7: Introduction to scRNA-seq Data Integration

Seurat Video Tutorials--video 7: Introduction to scRNA-seq Data Integration

Seurat Video Tutorial--video 6: Dimensional Reduction and Cell Clustering

Seurat Video Tutorial--video 6: Dimensional Reduction and Cell Clustering

Seurat Video Tutorials--Video 5: Data normalization, Feature Selection and Data Scaling

Seurat Video Tutorials--Video 5: Data normalization, Feature Selection and Data Scaling

Seurat Video Tutorials--Video 4: Quality Control and Selecting Cells for Further Analysis

Seurat Video Tutorials--Video 4: Quality Control and Selecting Cells for Further Analysis

Seurat Video Tutorials--video 3: Merging Seurat Objects

Seurat Video Tutorials--video 3: Merging Seurat Objects

Seurat Video Tutorials--Video 2: Creating Seurat Objects

Seurat Video Tutorials--Video 2: Creating Seurat Objects

Seurat Video Tutorials--Video 1: Loading single cell RNA sequencing data into R

Seurat Video Tutorials--Video 1: Loading single cell RNA sequencing data into R

Single cell Trajectory Analysis: Constructing Trajectories Using Scvelo

Single cell Trajectory Analysis: Constructing Trajectories Using Scvelo

respiratory failure and their physiological consequences

respiratory failure and their physiological consequences