▸ Welcome to my comprehensive guide on LiftOver and genome coordinate conversion methods! In this video, we'll explore the concept of LiftOver, a powerful tool for converting genome coordinates between different assemblies. In this video I explain what is #LiftOver, when to use and when NOT to use and demonstrate three efficient methods for converting genome coordinates using LiftOver and similar tools.
Method 1: UCSC Genome Browser
Method 2: Command Line Tools (CrossMap)
Method 3: R/Bioconductor Packages
By the end of this video, you'll have a solid understanding of how to use LiftOver to seamlessly convert genome coordinates and enhance your bioinformatics workflows. Don't forget to like, share, and subscribe for more insightful tutorials! I look forward to your comments under the comments section!

▸ R script - rtracklayer
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▸ What is the difference between hg19 and hg38?
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▸ Using Conda and virtual environments
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▸ SNP conversion FAQ by UCSC liftOver
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▸ CrossMap vignette
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▸ 0 based and 1 based coordinate system
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Chapters:
0:00 Intro
0:37 What is LiftOver?
2:11 Using UCSC LiftOver: When to use and When NOT to use?
4:23 Sources available to convert genomic coordinates across assemblies
6:37 Method 1: Using LiftOver on UCSC genome browser
9:33 Method 2: Using CrossMap
13:08 Method 3: Using R package: rtracklayer

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To get in touch:
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Github: [ Ссылка ]
Email: khushbu_p@hotmail.com

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