I reproduced the Single-cell RNAseq results of a Nature Communication paper using Seurat, fgsea, Monocle3, and Slingshot packages in R. This video is great for you if you're not sure how to make sense or interpret the outputs of a typical ScRNA analysis.
My R script:
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Paper that I used:
Wang, X., Xu, H., Cheng, C., Ji, Z., Zhao, H., Sheng, Y., ... & Zhu, H. H. (2020). Identification of a Zeb1 expressing basal stem cell subpopulation in the prostate. Nature communications, 11(1), 1-16.
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Connect with me:
Email: liquidbrain.r@gmail.com
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