Here's everything I did when replacing the transmission on my year 2000 Miata. I left the clutch alone this time around, but there are a handful of other people on here who cover that job.
Torque Specs:
Bellhousing (17mm)- 48-65 FT/LB
Transmission Input Cover(14mm)- 14-18 FT/LB
Transmission Drain(24mm)- 29-43 FT/LB
Transmission Fill(Square 14mm)- 18-29 FT/LB
Starter(12/14mm)- 28-38 FT/LB
Slave Cylinder(12mm)- 12-16 FT/LB
Driveshaft(14mm)- 20-22 FT/LB
Power Plant Frame(17mm)- 77-91 FT/LB
Power Plant Frame
Transmission Bracket(14mm)- 27-40FT/LB
Front subframe brace- 51-61 FT/LB
Lug nuts- 80-90 FT/LB (Personal preference)
